Stimulation of Indigenous Carbonate Precipitating Bacteria for Ground Improvement

Calcite minerals are precipitated in soil through biomineralisation which can be either organic or inorganic in nature. Biomineralisation can be employed to improve ground conditions in its natural state. Usually, studies of applied biomineralisation are highly interdisciplinary involving expertise from engineers, chemists and microbiologists. In this paper, we study the potential of biomineralisation from indigenous bacteria present in soil. The soil samples were collected from a high permeable zone and the bacteria that inhabit the soil were stimulated at a temperature of 15°C. A cementation solution consisting of 500mM calcium chloride, urea and nutrient broth at a pH of 7.5 was added to the soil samples. Inorganic precipitation was found to be dominant and was more efficient when compared to organic precipitation. Carbonate precipitation data indicated that inorganic precipitation were 1.37 times better at carbonate formation in comparison to organic precipitation. Scanning Electron Microscopy analysis identified cementation bonds formed between soil particles. It was deducted that organic precipitation is dependent on temperature, and may take an extended time at such low temperature. The preliminary data presented in this paper suggests that the implementation of biomineralisation with in-situ microbes is promising but requires further laboratory and field investigation before being considered for engineering application.XJTL

Biomineralisation performance of bacteria isolated from a landfill in China

We report an investigation of microbially-induced carbonate precipitation by seven indigenous bacteria isolated from a landfill in China. Bacterial strains were cultured in a medium supplemented with 25 mM calcium chloride and 333 mM urea. The experiments were carried out at 30 °C for 7 days with agitation by a shaking table at 130 rpm. Scanning Electron Microscopic (SEM) and X-ray diffraction (XRD) analyses showed variations in calcium carbonate polymorphs and mineral composition induced by all bacterial strains. The amount of carbonate precipitation was quantified by titration. The amount of carbonate precipitated in the medium varied among isolates with the lowest being Bacillus aerius rawirorabr15 (LC092833) precipitating around 1.5 times more carbonate per unit volume than the abiotic (blank) solution. Pseudomonas nitroreducens szh_asesj15 (LC090854) was found to be the most efficient, precipitating 3.2 times more carbonate than the abiotic solution. Our results indicate that bacterial carbonate precipitation occurred through ureolysis and suggest that variations in carbonate crystal polymorphs and rates of precipitation were driven by strain-specific differences in urease expression and response to the alkaline environment. These results and the method applied provide benchmarking/screening data for assessing the bioremediation potential of indigenous bacteria for containment of contaminants in landfills

Next-generation sequencing showing potential leachate influence on bacterial communities around a landfill in China

The impact of contaminated leachate on groundwater from landfills is well known but specific effects on bacterial consortia are less well-studied. Bacterial communities in landfill and an urban site located in Suzhou, China were studied using Illumina high-throughput sequencing. A total number of 153944 good quality reads were produced and sequences assigned to 6388 operational taxonomic units (OTUs). Bacterial consortia consisted of up to 16 phyla including Proteobacteria (31.9 to 94.9% at landfill, 25.1 to 43.3% at urban sites), Actinobacteria (0 to 28.7% at landfill, 9.9 to 34.3% at urban sites), Bacteroidetes (1.4 to 25.6% at landfill, 5.6 to 7.8% at urban sites), Chloroflexi (0.4 to 26.5% at urban sites only) and unclassified bacteria. Pseudomonas was the dominant (67-93%) genus in landfill leachate. Arsenic concentrations in landfill raw leachate (RL) (1.11x103 µg/L) and fresh leachate (FL2) (1.78x103 µg/L), and mercury concentrations in RL (10.9 µg/L) and FL2 (7.37 µg/L) were higher than Chinese State Environmental Protection Administration (SEPA) standards for leachate in landfills. Shannon diversity index and Chao 1 richness estimate showed RL and FL2 lacked richness and diversity when compared with other samples. This is consistent with stresses imposed by elevated arsenic and mercury and has implications for ecological site remediation by bioremediation or natural attenuation

MICP and Advances towards Eco-Friendly and Economical Applications

Biomineralization is a natural process aided by living organisms. Due to its applicability in ground improvement and bioremediation, Microbially Induced Calcite Precipitation (MICP) is an interdisciplinary field of study combining engineering, chemistry and microbiology. Bioremediation has been applied widely for contamination containment or removal, in this case it will be containment. MICP can also be applied to improve the efficiency of insitu bioremediation. Urease is an enzyme which can facilitate increased calcite precipitation. However the production of urease by bacteria and thus the resulting carbonate precipitation are inhibited by environmental factors including calcium concentration, bacterial concentration, pH and temperature. Under good conditions MICP can be used for heavy metal and radionuclide immobilization. However technologies such as bioconsolidation and biocementation require improvement such as time and cost. This paper highlights the application of MICP in addition to suggested improvements to make it more eco-friendly and sustainable.XJTL

Deploying aptameric sensing technology for rapid pandemic monitoring

The genome of virulent strains may possess the ability to mutate by means of antigenic shift and/or antigenic drift as well as being resistant to antibiotics with time. The outbreak and spread of these virulent diseases including avian influenza (H1N1), severe acute respiratory syndrome (SARS-Corona virus), cholera (Vibrio cholera), tuberculosis (Mycobacterium tuberculosis), Ebola hemorrhagic fever (Ebola Virus) and AIDS (HIV-1) necessitate urgent attention to develop diagnostic protocols and assays for rapid detection and screening. Rapid and accurate detection of first cases with certainty will contribute significantly in preventing disease transmission and escalation to pandemic levels. As a result, there is a need to develop technologies that can meet the heavy demand of an all-embedded, inexpensive, specific and fast biosensing for the detection and screening of pathogens in active or latent forms to offer quick diagnosis and early treatments in order to avoid disease aggravation and unnecessary late treatment costs. Nucleic acid aptamers are short, single-stranded RNA or DNA sequences that can selectively bind to specific cellular and biomolecular targets. Aptamers, as new-age bioaffinity probes, have the necessary biophysical characteristics for improved pathogen detection. This article seeks to review global pandemic situations in relation to advances in pathogen detection systems. It particularly discusses aptameric biosensing and establishes application opportunities for effective pandemic monitoring. Insights into the application of continuous polymeric supports as the synthetic base for aptamer coupling to provide the needed convective mass transport for rapid screening is also presented

MICP as a potential sustainable technique to treat or entrap contaminants in the natural environment: A review

In the last two decades, developments in the area of biomineralization has yielded promising results making it a potentially environmentally friendly technique for a wide range of applications in engineering and wastewater/heavy metal remediation. Microbially Induced Carbonate Precipitation (MICP) has led to numerous patented applications ranging from novel strains and nutrient sources for the precipitation of biominerals. Studies are being constantly published to optimize the process to become a promising, cost effective, ecofriendly approach when compared with the existing traditional remediation technologies which are implemented to solve multiple contamination/pollution issues. Heavy metal pollution still poses a major threat towards compromising the ecosystem. The removal of heavy metals is of high importance due to their recalcitrance and persistence in the environment. In that perspective, this paper reviews the current and most significant discoveries and applications of MICP towards the conversion of heavy metals into heavy metal carbonates and removal of calcium from contaminated media such as polluted water. It is evident from the literature survey that although heavy metal carbonate research is very effective in removal, is still in its early stages but could serve as a solution if the microorganisms are stimulated directly in the heavy metal environment

Discrete element modelling of strength and critical state characteristics of granular materials under axial compression and axial extension stress path tests

The critical state soil mechanics (CSSM) framework has been widely used across a range of problems in geomechanics involving complex loading conditions. However, the uniqueness of the critical state has been disputed for many years and it remains a controversial issue. Motivated by previous investigations, a series of discrete element method (DEM) simulations were performed under both axial compression (AC) and axial extension (AE) stress paths. All samples were isotropically compressed at varying mean normal effective stresses (confining pressures) and sheared to a large axial strain of approximately 60%. It is found that there exist unique values of critical void ratios and stress ratios under critical state, which are independent of the samples’ initial packings but dependent on stress paths. And the critical strength (stress ratio) for the AC stress path tests is higher than that for the AE stress path. The critical state lines (CSLs) are found to path-dependent but unique for each stress path. A unique linear relationship between the critical coordination numbers and critical void ratios is identified under the AC and AE stress paths respectively, but such a relationship depends on the stress paths. It is also found that there exist unique values of microscopic parameters in terms of deviator fabric under critical state, which are independent of the samples’ initial packings but dependent on stress paths. All these simulation results lead to the conclusion of non-uniqueness of CSLs from both macroscopic and microscopic viewpoints

Development and characteristics of polymer monoliths for advanced LC bioscreening applications: A review

© 2016 Elsevier B.V. Biomedical research advances over the past two decades in bioseparation science and engineering have led to the development of new adsorbent systems called monoliths, mostly as stationary supports for liquid chromatography (LC) applications. They are acknowledged to offer better mass transfer hydrodynamics than their particulate counterparts. Also, their architectural and morphological traits can be tailored in situ to meet the hydrodynamic size of molecules which include proteins, pDNA, cells and viral targets. This has enabled their development for a plethora of enhanced bioscreening applications including biosensing, biomolecular purification, concentration and separation, achieved through the introduction of specific functional moieties or ligands (such as triethylamine, N,N-dimethyl-N-dodecylamine, antibodies, enzymes and aptamers) into the molecular architecture of monoliths. Notwithstanding, the application of monoliths presents major material and bioprocess challenges. The relationship between in-process polymerisation characteristics and the physicochemical properties of monolith is critical to optimise chromatographic performance. There is also a need to develop theoretical models for non-invasive analyses and predictions. This review article therefore discusses in-process analytical conditions, functionalisation chemistries and ligands relevant to establish the characteristics of monoliths in order to facilitate a wide range of enhanced bioscreening applications. It gives emphasis to the development of functional polymethacrylate monoliths for microfluidic and preparative scale bio-applications